My_scripts-master
bam_renameChr.py
1KB
bam2fq_by_readname.py
1007B
fasta_stats.py
4KB
qwrap.py
2KB
recircularize_gff.py
2KB
fastq_stats.jl
2KB
orf_finder.py
8KB
old
Im_Uaena.sh
5KB
Im_Uaena.py
8KB
make_hic_contacts.py
2KB
vcf_maf.samtools.py
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msa_benchmark.py
6KB
Juicer_post_review.py
4KB
io_benchmark.ipynb
31KB
falcon_separate_phased.py
1KB
vcf_to_fa_v1.py
5KB
vcf_maf.varscan.py
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getContigInfo.pl
3KB
batch_augutus.py
2KB
practice_multiprocessing.ipynb
5KB
extract_intron_from_aligned_fasta.py
3KB
Juicer_assembly_to_agp.py
3KB
racon_stitch_telomere.py
4KB
guppy_demultiplexing.py
2KB
iterative_pilon.py
4KB
fastn_length_filter.py
8KB
trf_telomere_finder.py
7KB
fasta_wrap_line.py
2KB
fasta_findN.py
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run_purge_haplotigs.sh
591B
vcf_getMAF.py
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bam_stats.py
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uc_split_fasta_by_cluster.py
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fasta_rename.py
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fastq_check_dups.py
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deepsignal_CpG_calls_to_bed.py
2KB
gff_to_genoplotr_tab.py
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run_guppy_barcoder.sh
735B
fasta_GCcontent_bed.py
949B
vcf_to_fa.py
5KB
fasta_id_filter.py
4KB
fasta_make_windows.py
2KB
remove_log.sh
227B
recircularize_fasta.py
1KB
assembly_rmdup.py
4KB
vcf_estimate_QV.py
2KB
easy_statistics.py
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plink_dist_to_phylip.py
781B
fastq_interleave.py
833B
cds_codon_usage.py
2KB
fasta_pairwise_identity.py
11KB
collapse_bed.py
879B
iterative_racon.py
4KB
run_multi_fast5.sh
162B
uc_info.py
1KB
gff2fa.py
6KB
waitpid.sh
106B
fastq_stats.py
6KB
fastq_dedup.py
652B
dna2sixframe.py
700B
slack_notify.py
2KB
whatshap_stats.py
3KB
run_genomescope.sh
682B
rip_finder.py
9KB
agp2fasta.py
2KB
fasta_concatenate.py
2KB
run_guppy.sh
598B
fast5_check.py
4KB
ssh_twnia.sh
199B
.gitignore
39B
ncbi_fetch_seq.py
3KB
plot_coverage.R
3KB
fasta_remove_clone.py
2KB
alnfa_remove_invariant.py
2KB
lib
readfq.py
2KB
tqdm_hack.py
684B
fastq_check_qual.py
2KB
README.md
41B
run_purge_dups.sh
607B
mummer_wrapper.sh
639B
run_guppy_barcode_summary.py
1KB
fasta_sort.py
1KB
run_Haplomerger2.sh
1KB
alnfa_cut.py
812B
fastq_check_platform.py
7KB
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