kf dwh import vcf 源码
KF DWH进口 Spark Jobs将VCF导入,其他将数据库引用到数据仓库中。 如何 : 建立组装罐 sbt assembly 运行测试范围 sbt clean coverage test sbt coverageReport 将Jar上传到s3 请注意,当前版本可以在kf-dwh-import-vcf/version.sbt aws s3 cp target/scala-2.12/kf-dwh-import-vcf- $VERSION .jar s3://kf-strides-variant-parquet-prd/jobs/kf-dwh-import-vcf- $VERSION .jar 运行导入 ./run_emr_job_import.sh SD_46SK55A3 RE_000004 variants m5d.4xlarge 20 "s3a://kf-study-us-ea
文件列表
kf-dwh-import-vcf
(预估有个176文件)
.gitignore
96B
orphanet_gene_set.json
322B
biospecimen_sd_789.json
317B
biospecimen_sd_123456.json
326B
occurrences_sd_12345_re_00012.json
1KB
occurrences_sd_6789.json
1KB
occurrences_sd_12345.json
1KB
cancer_gene_census.csv
777B
DDG2P_17_5_2020.csv
535B
mutect2.vcf.gz
833KB
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