MR_Hist-master
tools.py
23KB
blockface_apply.py
8KB
Invivo
Exvivo_to_Invivo.py
6KB
Deform_Exvivo.py
4KB
Histology
Histopathology_to_Blockface.py
11KB
Day0MR_to_Histology.py
12KB
Day3MR_to_Histology.py
10KB
Segment.py
7KB
Sample_MR_on_Histopathology.py
19KB
Histopathology_Volumes.py
22KB
prep_mic.py
9KB
BatchProcessCZI.ijm
2KB
Sort_and_Label.py
2KB
microscopic_apply.py
8KB
NNSeg
models
__init__.py
0B
UNet
unet_parts.py
2KB
__init__.py
111B
unet_dense.py
1KB
unet_model.py
1002B
dense_parts.py
1KB
slurm
slurm-33307.out
420KB
slurm-33306.out
6KB
run.slurm
413B
slurm-33308.out
5.38MB
slurm-33305.out
75KB
slurm-33304.out
298B
run.slurm~
399B
data_prep.py
3KB
dataset.py
5KB
histology_seg.py
24KB
__init__.py
0B
segment.py
18KB
histopathology_outlines.py
4KB
tempRename.py
4KB
landmark_comp.py
17KB
VNet
vNetModel
vnet_parts.py
5KB
vnet_model.py
2KB
__init__.py
29B
vNetMaster.py
14KB
data_prep.py
5KB
dataset.py
6KB
losses.py
456B
__init__.py
24B
optimizer.py
6KB
learningrate.py
7KB
Blockface
blender_load_deformed_blocks.py
346B
Stack_Blocks.py
23KB
Deform_Blocks.py
5KB
Stitch_Blocks.py
19KB
Affine_Corrections.py
5KB
Affine_Stack_Blockface.py
11KB
.gitignore
684B
GenerateScrolls.py
19KB
Front_Face_Register.py
17KB
AnisoGradient.py
5KB
Exvivo
StackBlocks_to_Exvivo.py
9KB
get_mr_volumes.py
2KB
RabbitCommon
PointPicker2D.py
4KB
__init__.py
262B
settings.py
4KB
commonD2N.py
20KB
Config.py
11KB
Common.py
15KB
exceptions.py
664B
Exvivo_to_blocks.py
6KB
GenerateDeformation.py
13KB
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