npg_docker-master
basespace-smalt
Dockerfile
2KB
README.md
2KB
basespace
logo_full.png
61KB
details.txt
692B
logo_57.png
8KB
Input_Form.txt
5KB
logo_30.png
6KB
Callback_js.txt
640B
logo_100.png
14KB
Output_Report_result.txt
2KB
screen.png
182KB
smalt_entrypoint.sh
4KB
test
test.sh
580B
data
input
samples
10457448
truseqI1-8899-Name_S12_L001_R1_001.fastq.gz
1.52MB
truseqI1-8899-Name_S12_L001_R2_001.fastq.gz
1.6MB
genomes
Escherichia_coli_K_12_DH10B
NCBI
2008-03-17
Sequence
WholeGenomeFasta
genome.fa
4.54MB
expected_output
truseqI1-8899-Name_S12_L001_R1_001.flagstat
411B
truseqI1-8899-Name_S12_L001_R1_001.md5
32B
truseqI1-8899-Name_S12_L001_R1_001.stats
25KB
LICENSE
18KB
IGM-talk_docker-pipelines.pdf
3.39MB
orchestrated-containers
private_registry
p4align
Dockerfile
762B
bwa_align.json
1017B
p4_entrypoint.sh
505B
human
human.fa
16KB
Dockerfile
88B
reference
human.fa.pac
4KB
human.fa.bwt
16KB
human.fa.amb
19B
human.fa.ann
100B
human.fa.sa
8KB
hs37d5_mt.fa
16KB
setup.sh
1KB
testinput
9225_4#1_mt_paired.fq
4.13MB
README.md
821B
p4align.sh
2KB
README.md
2KB
p4
Dockerfile
3KB
README.md
575B
test
test.sh
3KB
p4_templates
post_alignment.vtf
2KB
seqchksum.vtf
2KB
post_alignment_filter.vtf
4KB
generic_alignment_with_phix.vtf
24KB
bwa_mem_alignment.vtf
1KB
expected_output
12588_1.bamstats
53KB
12588_1_phix.flagstat
377B
12588_1_in.bamseqchecksum
305B
12588_1_out.bamseqchecksum
305B
12588_1.bam.md5
32B
12588_1.flagstat
419B
12588_1_phix.bamstats
8KB
autobuild
baseimage
Dockerfile
364B
autobuild.sh
1KB
README.md
412B
to-build
picard
Dockerfile
628B
bwa
Dockerfile
442B
bowtie2
Dockerfile
485B
smalt
Dockerfile
1KB
samtools
Dockerfile
611B
tophat
Dockerfile
542B
illumina2bam
Dockerfile
710B
biobambam
Dockerfile
864B
boot2docker-wrapper
README.md
2KB
b2d-wrapper.sh
3KB
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