Ab Initio Molecular Dynamics Basic Theory and Advanced Methods A nice book on Ab Initio Molecular Dynamics, it deals with Basic Theory and Advanced Methods.
The Art of Molecular Dynamics Simulation by RAPAPORT Another popular MD book in the US, you should have it if you are in the MD area.
ComputerSimulationofLiquidsbyAllenTildesley ThisisanMDbookyoumusthave.Ifpossibleyouhaveoneinyoureasyrearch.
UnderstandingMolecularSimulation_DFrenkelBSmit A nice book written by D. Frenkel and B. Smit you should read if available.